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5x quick ligase buffer  (New England Biolabs)


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    New England Biolabs 5x quick ligase buffer
    5x Quick Ligase Buffer, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 591 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/5x+nebnext+quick+ligation+buffer/NEBNext+Quick+Ligation+RxBuff/pm42098827-396-20-24
    Average 98 stars, based on 591 article reviews
    5x quick ligase buffer - by Bioz Stars, 2026-10
    98/100 stars

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    Ligation:

    Article Title: FTO depletion does not alter m 6 A stoichiometry in AML mRNA: a reassessment using direct RNA nanopore sequencing
    Article Snippet: MTT assay was performed following Abcam’s instructions, with 5 timepoints: 24 h, 48 h, 72 h, 96 h, and 168 h. On each day, one plate was sacrificed by spinning down at 1,000 x g for 5 min at 4°C, followed by aspiration and resuspension in 50 μl serum-free RPMI media and 50 μl of 5 mg/ml MTT solution (Abcam, ab146345-500mg) in PBS. .. Next, the pooled library was ligated with 6 μl RNA ligation adapter (RLA), 3 μl T4 DNA ligase, 8 μl 5X NEBNext Quick Ligation buffer, and 3 μl nuclease-free water, incubating for 10 min at room temperature. ..

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μL 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μL T4 DNA ligase high concentration (NEB) and 0.2 μL RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μL of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μL fresh 80 % EtOH, and eluted in 10 μL RNase-free H 2 O. .. Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Article Title: Parallel in-depth analysis of repeat expansions: an updated Clin-CATS workflow for nanopore R10 flow cells
    Article Snippet: .. To the now pooled samples, 10 μL 5X NEBNext Quick Ligation Buffer, 5 μL NEB T4 DNA Ligase from the NEB Quick Ligation Module (NEB, E6056), and 1.0 μL Native Adapter (NA) ONT, SQK-NBD114.24) were added, the tubes were flicked and spun down, then incubated for 20 minutes at room temperature. .. AXP (ONT, SQK-NBD114.96) were vortexed, 20 μL per sample was added at a 0.4X ratio and incubated on a Thermomixer (Eppendorf, 5382000015) for 10 minutes at 450 rpm at room temperature.

    Article Title: Chemical control of 2’-hydroxyl-dependent Cas9 target engagement enables CRISPR RNA ribose replacement
    Article Snippet: The pooled samples were purified using AMPure XP beads (Beckman Coulter) and eluted in 30 μL of elution buffer (10 mM Tris-HCl, pH 8.5). .. The eluted barcoded samples were adapter ligated by combining 30 μL of pooled barcoded samples, 5 μL of native adapter (NA), 10 μL of 5x NEBNext Quick Ligation Buffer (NEB), 5 μL of Quick T4 DNA Ligase (NEB) and incubated for 30 min at RT. .. The library was purified using AMPure XP beads, loaded on a PromethION R10.4.1 DNA flow cell and sequenced on an Oxford Nanopore Technologies (ONT) P2 solo using MinKNOW.

    Article Title: Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing
    Article Snippet: .. In detail, for each sample, 100 ng of poly-adenylated in vitro transcribed RNA in 4.4 μL, was transferred into a PCR tube, followed by addition of 1 μL previously annealed custom RTA adapter, 1.6 μL 5x NEBNext Quick Ligation Buffer (NEB) and 1 μL T4 DNA Ligase high concentration (NEB). ..

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation). .. Briefly, 10 μL purified library was mixed with 6 μL 5x NEBNext Quick Ligation Buffer, 5 μL RLA sequencing adapter (ONT SQK-RNA004) and 3 μL T4 DNA Ligase high concentration in a final volume of 30 μL and incubated 15 min at 22°C. ..

    Article Title: mRNA stability in response to m 6 A placement is linked to cell identity in planarians
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μl 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μl T4 DNA Ligase high concentration (NEB) and 0.2 μl RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μl of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μl fresh 80 % EtOH, and eluted in 10 μl RNase-free H2O. .. Reverse transcription was performed by adding 8 μl of 5X Induro buffer, 2 μl of 10 mM dNTP, 2 μl of 10 uM random hexamer oligonucleotides, 2 μl Induro RT (NEB), 0.5 μl RNasin in a final volume of 40 μl and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Article Title: Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing
    Article Snippet: .. For this we transferred 10 μL of purified reversetranscribed RNA-RTA library into a 1.5 ml DNA LoBind tube (Eppendorf), followed by addition of 2.5 μL H2O, 4 μL 5x NEBNext Quick Ligation Buffer (NEB), 2 μL RMX motor protein adapter (ONT SQK-RNA002), and 1.5 μL T4 DNA Ligase high conc. (NEB). ..

    Concentration Assay:

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μL 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μL T4 DNA ligase high concentration (NEB) and 0.2 μL RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μL of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μL fresh 80 % EtOH, and eluted in 10 μL RNase-free H 2 O. .. Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Article Title: Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing
    Article Snippet: .. In detail, for each sample, 100 ng of poly-adenylated in vitro transcribed RNA in 4.4 μL, was transferred into a PCR tube, followed by addition of 1 μL previously annealed custom RTA adapter, 1.6 μL 5x NEBNext Quick Ligation Buffer (NEB) and 1 μL T4 DNA Ligase high concentration (NEB). ..

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation). .. Briefly, 10 μL purified library was mixed with 6 μL 5x NEBNext Quick Ligation Buffer, 5 μL RLA sequencing adapter (ONT SQK-RNA004) and 3 μL T4 DNA Ligase high concentration in a final volume of 30 μL and incubated 15 min at 22°C. ..

    Article Title: mRNA stability in response to m 6 A placement is linked to cell identity in planarians
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μl 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μl T4 DNA Ligase high concentration (NEB) and 0.2 μl RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μl of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μl fresh 80 % EtOH, and eluted in 10 μl RNase-free H2O. .. Reverse transcription was performed by adding 8 μl of 5X Induro buffer, 2 μl of 10 mM dNTP, 2 μl of 10 uM random hexamer oligonucleotides, 2 μl Induro RT (NEB), 0.5 μl RNasin in a final volume of 40 μl and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Incubation:

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μL 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μL T4 DNA ligase high concentration (NEB) and 0.2 μL RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μL of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μL fresh 80 % EtOH, and eluted in 10 μL RNase-free H 2 O. .. Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Article Title: Parallel in-depth analysis of repeat expansions: an updated Clin-CATS workflow for nanopore R10 flow cells
    Article Snippet: .. To the now pooled samples, 10 μL 5X NEBNext Quick Ligation Buffer, 5 μL NEB T4 DNA Ligase from the NEB Quick Ligation Module (NEB, E6056), and 1.0 μL Native Adapter (NA) ONT, SQK-NBD114.24) were added, the tubes were flicked and spun down, then incubated for 20 minutes at room temperature. .. AXP (ONT, SQK-NBD114.96) were vortexed, 20 μL per sample was added at a 0.4X ratio and incubated on a Thermomixer (Eppendorf, 5382000015) for 10 minutes at 450 rpm at room temperature.

    Article Title: Chemical control of 2’-hydroxyl-dependent Cas9 target engagement enables CRISPR RNA ribose replacement
    Article Snippet: The pooled samples were purified using AMPure XP beads (Beckman Coulter) and eluted in 30 μL of elution buffer (10 mM Tris-HCl, pH 8.5). .. The eluted barcoded samples were adapter ligated by combining 30 μL of pooled barcoded samples, 5 μL of native adapter (NA), 10 μL of 5x NEBNext Quick Ligation Buffer (NEB), 5 μL of Quick T4 DNA Ligase (NEB) and incubated for 30 min at RT. .. The library was purified using AMPure XP beads, loaded on a PromethION R10.4.1 DNA flow cell and sequenced on an Oxford Nanopore Technologies (ONT) P2 solo using MinKNOW.

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation). .. Briefly, 10 μL purified library was mixed with 6 μL 5x NEBNext Quick Ligation Buffer, 5 μL RLA sequencing adapter (ONT SQK-RNA004) and 3 μL T4 DNA Ligase high concentration in a final volume of 30 μL and incubated 15 min at 22°C. ..

    Article Title: mRNA stability in response to m 6 A placement is linked to cell identity in planarians
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μl 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μl T4 DNA Ligase high concentration (NEB) and 0.2 μl RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μl of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μl fresh 80 % EtOH, and eluted in 10 μl RNase-free H2O. .. Reverse transcription was performed by adding 8 μl of 5X Induro buffer, 2 μl of 10 mM dNTP, 2 μl of 10 uM random hexamer oligonucleotides, 2 μl Induro RT (NEB), 0.5 μl RNasin in a final volume of 40 μl and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Purification:

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μL 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μL T4 DNA ligase high concentration (NEB) and 0.2 μL RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μL of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μL fresh 80 % EtOH, and eluted in 10 μL RNase-free H 2 O. .. Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation). .. Briefly, 10 μL purified library was mixed with 6 μL 5x NEBNext Quick Ligation Buffer, 5 μL RLA sequencing adapter (ONT SQK-RNA004) and 3 μL T4 DNA Ligase high concentration in a final volume of 30 μL and incubated 15 min at 22°C. ..

    Article Title: mRNA stability in response to m 6 A placement is linked to cell identity in planarians
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μl 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μl T4 DNA Ligase high concentration (NEB) and 0.2 μl RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μl of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μl fresh 80 % EtOH, and eluted in 10 μl RNase-free H2O. .. Reverse transcription was performed by adding 8 μl of 5X Induro buffer, 2 μl of 10 mM dNTP, 2 μl of 10 uM random hexamer oligonucleotides, 2 μl Induro RT (NEB), 0.5 μl RNasin in a final volume of 40 μl and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Article Title: Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing
    Article Snippet: .. For this we transferred 10 μL of purified reversetranscribed RNA-RTA library into a 1.5 ml DNA LoBind tube (Eppendorf), followed by addition of 2.5 μL H2O, 4 μL 5x NEBNext Quick Ligation Buffer (NEB), 2 μL RMX motor protein adapter (ONT SQK-RNA002), and 1.5 μL T4 DNA Ligase high conc. (NEB). ..

    Next-Generation Sequencing:

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μL 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μL T4 DNA ligase high concentration (NEB) and 0.2 μL RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μL of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μL fresh 80 % EtOH, and eluted in 10 μL RNase-free H 2 O. .. Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    Article Title: mRNA stability in response to m 6 A placement is linked to cell identity in planarians
    Article Snippet: .. For each sample, 100 ng of polyA-selected RNA were ligated to 1 μL of 0.7 μM annealed RTA in the presence of 2 μl 5x NEBNext Quick Ligation Buffer (NEB), 0.5 μl T4 DNA Ligase high concentration (NEB) and 0.2 μl RNAsin (Promega) in a final volume of 10 μL by incubation at 22°C for 15 min. To stop the ligation, 2 μl of 0.5 M EDTA was added and samples were pooled and purified with 0.5 volumes of SPRI beads (Mag-Bind TotalPure NGS, Omega Bio-tek), washed twice with 200 μl fresh 80 % EtOH, and eluted in 10 μl RNase-free H2O. .. Reverse transcription was performed by adding 8 μl of 5X Induro buffer, 2 μl of 10 mM dNTP, 2 μl of 10 uM random hexamer oligonucleotides, 2 μl Induro RT (NEB), 0.5 μl RNasin in a final volume of 40 μl and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation).

    In Vitro:

    Article Title: Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing
    Article Snippet: .. In detail, for each sample, 100 ng of poly-adenylated in vitro transcribed RNA in 4.4 μL, was transferred into a PCR tube, followed by addition of 1 μL previously annealed custom RTA adapter, 1.6 μL 5x NEBNext Quick Ligation Buffer (NEB) and 1 μL T4 DNA Ligase high concentration (NEB). ..

    Polymerase Chain Reaction:

    Article Title: Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing
    Article Snippet: .. In detail, for each sample, 100 ng of poly-adenylated in vitro transcribed RNA in 4.4 μL, was transferred into a PCR tube, followed by addition of 1 μL previously annealed custom RTA adapter, 1.6 μL 5x NEBNext Quick Ligation Buffer (NEB) and 1 μL T4 DNA Ligase high concentration (NEB). ..

    Sequencing:

    Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species
    Article Snippet: Reverse transcription was performed by adding 8 μL of 5X Induro buffer, 2 μL of 10 mM dNTP, 2 μL of 10 μM random hexamer oligonucleotides, 2 μL Induro RT (NEB), 0.5 μL RNasin in a final volume of 40 μL and incubation 2 min at 22°C (annealing), 15 min at 60°C (reverse transcription) and 10 min at 70°C (heat-inactivation). .. Briefly, 10 μL purified library was mixed with 6 μL 5x NEBNext Quick Ligation Buffer, 5 μL RLA sequencing adapter (ONT SQK-RNA004) and 3 μL T4 DNA Ligase high concentration in a final volume of 30 μL and incubated 15 min at 22°C. ..



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